moving the lamppost

random musings of a molecular biologist turned code jockey in the era of big data and open science.

NEW RELEASE: Blacktie v0.2.0rc1

I have released a new version of blacktie (0.2.0rc1) which has a number of minor fixes and new features.


One major gotcha will be that the yaml config file has been changed slightly to facilitate the inclusion of biological replicate data. So please take a look at the demo config file in the docs posted at:

Thanks and please let me know what you think. I need your input to make improvements.




Release date: 2013-04-19

  • git tag: ‘v0.2.0rc1’

  • email_notification is now adjustable for other email servers

  • Added support for handling biological replicates in cuffdiff runs.

  • Major changes to yaml config:
    • condition_queue[index].group_id –> condition_queue[index].experiment_id
    • addition of condition_queue[index].replicate_id to track replicate data
    • condition_queue[index].name now represents description of an ‘experimental condition’ and will be shared by replicates.